Title
A molecular-based approach for examining responses of eukaryotes in microcosms to contaminant-spiked estuarine sediments
Document Type
Article
Publication Date
1-7-2014
Keywords
Triclosan, Metabarcoding, Environmental DNA (e-DNA, Next generation sequencing, 18S rRNA
Abstract
Ecotoxicological information for most contaminants is limited to a small number of taxa, and these are generally restricted to comparatively hardy organisms that are readily extractable from test media and easily identifiable. Advances in DNA sequencing can now provide a comprehensive view of benthic invertebrate diversity. The authors applied 454 pyrosequencing to examine the responses of benthic communities in microcosms exposed to sediments with elevated concentrations of triclosan, the endpoint being eukaryl communities that have successfully vertically migrated through the manipulated sediments. The biological communities associated with the 3 treatments (control triclosan, low triclosan [14 mg/kg], and high triclosan [180 mg/kg]) clustered into 3 groups: control/low (n = 6 controls and 4 low), moderate (n = 2 low), and high (n = 5 high). One sample was discarded as an outlier. The most pronounced change as a response to triclosan was the loss of number of metazoan operational taxonomic units (OTUs), indicative of the control/low and moderate groups, with this being most evident in the range of taxa associated with the classes Chromadorea and Bivalvia and the phylum Kinorhyncha. The authors also describe a range of other taxa that aided discrimination between the groups; compare findings with traditionally obtained meio- and macrofaunal communities obtained from the same experiment; and illustrate some of the advantages and limitations associated with both the molecular and traditional approaches. The described approach illustrates the capacity for amplicon sequencing to provide ecologically relevant information that can be used to strengthen an understanding of how sedimentary communities respond to a range of environmental stressors.
Publication Title
Environmental Toxicology and Chemistry
Volume
33
First Page
359
Last Page
369
DOI
https://doi.org/10.1002/etc.2450
Recommended Citation
Chariton, A.A., Ho, K.T., Proestou, D., Bik, H., Simpson, S.L., Portis, L.M., Cantwell, M.G., Baguley, J.G., Burgess, R.M., Pelletier, M.M., Perron, M., Gunsch, C. and Matthews, R.A. (2014), A molecular-based approach for examining responses of eukaryotes in microcosms to contaminant-spiked estuarine sediments. Environ Toxicol Chem, 33: 359-369. https://doi.org/10.1002/etc.2450
Type
Text
Rights
Copying of this document in whole or in part is allowable only for scholarly purposes. It is understood, however, that any copying or publication of this document for commercial purposes, or for financial gain, shall not be allowed without the author’s written permission.
Language
English
Format
application/pdf