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Date of Award

Summer 2025

Document Type

Masters Thesis

Department or Program Affiliation

Chemistry

Degree Name

Master of Science (MS)

Department

Chemistry

First Advisor

Clark, Catherine D.

Second Advisor

Lemkau, Karin

Third Advisor

Montaño, Manuel D.

Abstract

Padilla Bay, located in the Puget Sound estuarine system of Washington state, is a biologically diverse area with extensive eelgrass beds that play a key role in the ecological balance of the region. This study investigated the complex dynamics of dissolved organic matter (DOM) by examining its sources, transformations, and export patterns in salt marsh and eelgrass environments. Using optical techniques and advanced Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS), we obtained a detailed molecular understanding of how environmental processes shaped DOM. Sampling was conducted over the course of a year at the Little Indian Slough salt marsh to capture tidal and seasonal variations in DOM. In the salt marsh, we quantified dissolved organic carbon (DOC) and characterized the optical properties of water across tidal phases, leveraging the absorbance and fluorescence characteristics of chromophoric dissolved organic matter (CDOM). This enabled us to analyze DOM composition and transformations using spectroscopic techniques. We also analyzed marsh plant leachates, particularly from saltgrass, to assess their integration into the broader DOM pool. We examined whether DOM export from the marsh peaked during ebb tides in the warmer months due to heightened vegetation productivity. We also explored whether eelgrass-derived material introduced distinct molecular signatures. Additionally, we conducted biological and photochemical degradation experiments to assess DOM lability and its transformations over time. By comparing molecular compositions across different sources and conditions, including high and low tides, eelgrass, salt grass, and degradation products, we aimed to understand the dynamic interplay of biogeochemical processes in Padilla Bay. The integration of mass spectrometry data with environmental monitoring enhanced our understanding of DOM cycling and its ecological implications, supporting informed strategies for the conservation and management of coastal ecosystems.

Type

Text

Keywords

Dissolved Organic Matter (DOM), Chromophoric Dissolved Organic Matter (CDOM), Estuarine Carbon Cycling, Padilla Bay, Optical Spectroscopy, Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FT-ICR MS), Eelgrass, Salt Marsh, Photodegradation, Biodegradation

Publisher

Western Washington University

OCLC Number

1534560132

Subject – LCSH

Water--Organic compound content--Washington (State)--Padilla Bay; Optical spectroscopy--Washington (State)--Padilla Bay; Estuarine ecology--Washington (State)--Padilla Bay; Eelgrass--Washington (State)--Padilla Bay; Salt marsh ecology--Washington (State)--Padilla Bay; Ion cyclotron resonance spectrometry; Fourier transform spectroscopy; Photodegradation--Washington (State)--Padilla Bay

Geographic Coverage

Padilla Bay (Wash.)

Format

application/pdf

Genre/Form

masters theses

Language

English

Rights

Copying of this document in whole or in part is allowable only for scholarly purposes. It is understood, however, that any copying or publication of this document for commercial purposes, or for financial gain, shall not be allowed without the author’s written permission.

Available for download on Saturday, August 08, 2026

Included in

Chemistry Commons

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